Controls the execution of individual simulations with deSolve using either R scripts or loadable C libraries.
run_simulation_ubiquity(SIMINT_parameters, SIMINT_cfg, SIMINT_dropfirst = TRUE)
vector of parameters
ubiquity system object
The simulation output is mapped (
som) is a list.
time-course is stored in the
The first column (
time) contains the simulation time in the units of the simulation.
Next there is a column for each: State, output and system parameter
Models with covariate will contain the initial value (prefix:
SIMINT_CVIC_) as well as the values at each time point
Each static and dynamic system parameter is also passed through
A column for each timescale is returned with a "
Simulation vignette (
vignette("Simulation", package = "ubiquity"))