Function reference
-
build_system()
- Build the System File
-
system_new()
- Create New
system.txt
File
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system_new_list()
- Fetch List of Available System Templates
-
workshop_fetch()
- Fetch Ubiquity Workshop Sections
-
system_fetch_parameters()
- Fetch System Parameters
-
system_fetch_iiv()
- Fetch Variability Terms
-
system_fetch_set()
- Fetch Mathematical Set
-
system_fetch_template()
- Create New Analysis Template
-
system_fetch_TSsys()
- Fetch System Timescale
-
system_view()
- View Information About the System
-
system_check_requirements()
- Check For Perl and C Tools
-
system_set_option()
- Setting Analysis Options
-
system_set_parameter()
- Set Value for Parameter
-
system_set_iiv()
- Set Variability Terms
-
run_simulation_ubiquity()
- Simulate Individual Response
-
simulate_subjects()
- Run Population Simulations
-
system_load_data()
- Loading Datasets
-
system_select_set()
- Selecting Parameter Sets
-
som_to_df()
- Converts the Wide/Verbose Output Simulation Functions into Data Frames
-
system_check_steady_state()
- Verify System Steady State
-
system_zero_inputs()
- Zero All Model Inputs
-
system_set_parameter()
- Set Value for Parameter
-
system_set_bolus()
- Set Bolus Inputs
-
system_set_rate()
- Set Infusion Rate Inputs
-
system_set_covariate()
- Set Covariate Values
-
run_simulation_titrate()
- Simulate With Titration or Rule-Based Inputs
-
system_new_tt_rule()
- Titration Rules
-
system_set_tt_cond()
- Define Titration Triggers and Actions
-
system_set_tt_rate()
- Actual Function Called by
SI_TT_RATE
-
system_estimate_parameters()
- Control Estimation Process
-
system_fetch_guess()
- Fetch Current Parameter Guesses
-
system_set_guess()
- Alter Initial Guess and Parameter Bounds
-
system_plot_cohorts()
- Plot Estimation Results
-
system_clear_cohorts()
- Clear all Cohorts
-
system_define_cohort()
- Define Estimation Cohort
-
system_define_cohorts_nm()
- Define Cohorts from NONMEM Input File
-
system_simulate_estimation_results()
- Simulate Results at Estimates
-
system_od_general()
- General Observation Details Function
-
system_rpt_add_doc_content()
- Adds Content to a Word Report
-
system_rpt_add_slide()
- Add Slide to a Powerpoint Report
-
system_rpt_estimation()
- Generate a Report from Parameter Estimation
-
system_rpt_nca()
- Report NCA
-
system_rpt_read_template()
- Initialize a New Report
-
system_rpt_save_report()
- Save Report to a File
-
system_rpt_template_details()
- Generate Details about Report Template
-
system_fetch_rpt_officer_object()
- Extracts the officer Object From the Specified ubiquity Report
-
system_fetch_rpt_onbrand_object()
- Extracts the onbrand Object From the Specified ubiquity Report
-
system_set_rpt_officer_object()
- Sets the officer Object for the Specified ubiquity Report
-
system_set_rpt_onbrand_object()
- Sets the onbrand Object for the Specified ubiquity Report
-
system_fetch_nca()
- Fetch NCA Results
-
system_fetch_nca_columns()
- Columns in NCA Analysis
-
system_nca_parameters_meta()
- List NCA parameters, text names and descriptions
-
system_nca_run()
- Automatic NCA
-
system_nca_summary()
- Summarize NCA Results in Tabular Format
-
calculate_halflife()
- Calculate the halflife of data
-
gg_axis()
- Make Pretty ggplot x- or y-Axis Log 10 Scale
-
gg_log10_xaxis()
- Make Pretty ggplot x-Axis Log 10 Scale
-
gg_log10_yaxis()
- Make Pretty ggplot y-Axis Log 10 Scale
-
estimate_parameters()
- Performs parameter estimation
-
linspace()
- Implementation of the
linspace
Function from Matlab
-
logspace()
- Implementation of the
logspace
Function from Matlab
-
pad_string()
- Pad String with Spaces
-
prepare_figure()
- Make ggplot Figure Pretty
-
vp()
- Print and Log Messages
-
var2string()
- Converts Numeric Variables into Padded Strings
-
system_log_debug_save()
- Save variables to files
-
system_log_init()
- Initialize System Log File
-
system_glp_init()
- Initialize GLP study design
-
system_glp_scenario()
- Design GLP Study For a Scenario