Build the System File — build

Builds the specified system file creating the targets for R and other languages as well as the templates for performing simulations and estimations.

Usage

build_system(
  system_file = "system.txt",
  distribution = "automatic",
  perlcmd = "perl",
  output_directory = file.path(".", "output"),
  temporary_directory = file.path(".", "transient"),
  verbose = TRUE,
  ubiquity_app = FALSE,
  debug = TRUE
)

Arguments

system_file: name of the file defining the system in the ubiquity format (default = 'system.txt'), if the file does not exist a template will be created and compiled.
distribution: indicates weather you are using a 'package' or a 'stand alone' distribution of ubiquity. If set to 'automatic' the build script will first look to see if the ubiquity R package is installed. If it is installed it will use the package. Otherwise, it will assume a "sand alone" distribution.
perlcmd: system command to run perl ("perl")
output_directory: location to store analysis outputs (file.path(".", "output"))
temporary_directory: location to templates and otehr files after building the system (file.path(".", "transient"))
verbose: enable verbose messaging (TRUE)
ubiquity_app: set to TRUE when building the system to be used with the ubiquty App (FALSE)
debug: Boolean variable indicating if debugging information should be displayed (TRUE)

Value

initialized ubiquity system object

Examples

# \donttest{
fr = system_new(file_name        = "system.txt", 
                system_file      = "mab_pk", 
                overwrite        = TRUE, 
                output_directory = tempdir())
cfg = build_system(system_file  = file.path(tempdir(), "system.txt"),
      output_directory          = file.path(tempdir(), "output"),
      temporary_directory       = tempdir())
#> 
#> ── Building the system: /var/folders/l9/6pm7xq5j1hn6l00zrs22j6mc0000gn/T//RtmpoL
#> → ubiquity:     https://r.ubiquity.tools
#> → Distribution: package (2.0.4)
#> → Creating output directory
#> → Compiling C version of system
#> → Loading the shared C library
#> ✔ System built
#> ℹ To fetch a new analysis template use `system_fetch_template`
#> ℹ For example:
#> ℹ   fr = system_fetch_template(cfg, template = "Simulation")
#> ℹ   fr = system_fetch_template(cfg, template = "Estimation")
# }