The system file can contain multiple parameterizations using
the <PSET:?:?>?
notation. This function provides the means for
switching between these parameterizations, and (optionally) specifying a
subset of parameters estimated when performing parameter estimation.
Arguments
- cfg
ubiquity system object
- set_name
string containing the name of the parameter set
- parameter_names
list of parameter names to be estimated
Examples
# \donttest{
# Creating a system file from the mab_pk example
fr = system_new(file_name = "system.txt",
system_file = "mab_pk",
overwrite = TRUE,
output_directory = tempdir())
# Building the system
cfg = build_system(system_file = file.path(tempdir(), "system.txt"),
output_directory = file.path(tempdir(), "output"),
temporary_directory = tempdir())
#>
#> ── Building the system: /var/folders/l9/6pm7xq5j1hn6l00zrs22j6mc0000gn/T//RtmpiD
#> → ubiquity: https://r.ubiquity.tools
#> → Distribution: package (2.0.1)
#> → Compiling C version of system
#> → Loading the shared C library
#> ✔ System built
#> ℹ To fetch a new analysis template use `system_fetch_template`
#> ℹ For example:
#> ℹ fr = system_fetch_template(cfg, template = "Simulation")
#> ℹ fr = system_fetch_template(cfg, template = "Estimation")
# Selecting the default parameter set
cfg = system_select_set(cfg, "default")
# }